rs27219302 SNP Detail

Summary

• ID
  rs27219302
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:23937867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTGGCAC CTATGAGTGT
  ATGGTGAGGG GTGGGGGTGG GGTGTGGAAC CAATGATTTA ATTTGCATAA CCTTTATCCT
  ATTATGTGTC AATTAATGAA CCGTGTTAAG ATACACAATA CAAGGCTAGG GAAATGGCTC
  AGTCGGTAAA GTGCTTGACA AAAGGAGGAG GAGAAAAAAA TAGACATAAA ATTCTGTATT
  W
  GTCCAACAAG TCTGCTCTGG TTGGACAGAA GAGCTACCAC GGGGCACTAA CTCTACAGAG
  AAATTTAGAC AGCATAAAAT AAAACAGCAG GGTTTTTTGT TGCTTGTAAA TTAGCTCCAC
  AGTTAATCAC TTCTTACTAG TTTTATATAG TTACTTCTAG CAACAATTTA CCCCCAGATC
  GGTGACTTGA CTCTCTTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37427138	NES08789230	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27219302					SNP	A	A	A	A	A	T	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37427138	NES08789230	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:23937867 () rs orientation: forward

Symbol	Name	Function Class
Hnmt	histamine N-methyltransferase	within coordinates
Tssr22898	transcription start site region 22898	973 bp downstream
Tssr22899	transcription start site region 22899	1002 bp downstream
Tssr22900	transcription start site region 22900	1501 bp downstream
Tssr22901	transcription start site region 22901	1534 bp downstream
Tssr22902	transcription start site region 22902	1553 bp downstream