rs27219310 SNP Detail

Summary

• ID
  rs27219310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:23937013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGCCTTA CACAATCCCT
  CCCCGCCCTT CAGTCTAAAC TGTAAGGTTT TTTTTTTTTT TTTTTTTAAA TCAAGGATCT
  GGCTAAGCTA AGGGATGGAT ATGTACTATC CAAACTGAAA GTATTGAGAG AGTAACCCAT
  AACCTATTAA AAGGACGACA TAAACCCCAT TTGTCGCCAT TTAAGAACCA CACCTGATTT
  Y
  GAAAAGAAGG CTATAAGGCA CCAGCTCCAG GAACAGACCA CAAAATCCAG AAACAAGGTC
  ATAAAACCTT CTCCCAAAGA AAAGTCTGGG GATAACCACA GAAAATGAGC AATATCTTAT
  CTCAGGATGA GTCTTCTGTG TTGAGCAGCC CTATCTCATC CTATGGTTAA ATGCTCATAA
  CATAGGAATG CAGACCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37427146	NES08789273	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27219310					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37427146	NES08789273	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:23937013 () rs orientation: forward

Symbol	Name	Function Class
Hnmt	histamine N-methyltransferase	within coordinates
Rr552840	regulatory region 552840	542 bp proximal
Rr552841	regulatory region 552841	1855 bp proximal
Tssr22898	transcription start site region 22898	1827 bp downstream
Tssr22899	transcription start site region 22899	1856 bp downstream