rs27221651 SNP Detail

Summary

• ID
  rs27221651
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34956380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTTTAG CACACAGCTA
  AATAATGGAG AGAGAATGCT GTATATGCAA ACTCTATAAA GCAGACACCT TTGAAAACCT
  TCACACATTT TTCTGAAGAG ATGGGCATAG GAATGCTCCT TAAGTCATTT GTAATTTCAA
  GAATAAGGCT GCAACCTCAG AAAAGAAGGA AAAGCAATCA CTAGAACATC CATATTATGG
  R
  ATACAGTGTT GCATGGGCCA TGTTTTGAAA TGGCACAAAA ACCATGATAA CATTTATATA
  AGCTTAAGAG CACACAAAAG CCAATGGCAT TGCCTGCCTG CATGCTGTTG TCAAGTTATA
  TAAATACATG GTATATAAAT CAACTGTAGG TGAGTTTATA TTTCCATGCC ACATGGTAAT
  TCAGGAATTG TTGGGCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393379	NES08733833	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27221651					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393379	NES08733833	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34956380 () rs orientation: forward

Symbol	Name	Function Class
Gm39794	predicted gene, 39794	within coordinates
Gm57428	predicted gene, 57428	within coordinates
Gm74852	predicted gene, 74852	within coordinates
Rr373034	regulatory region 373034	within coordinates
Tssr17452	transcription start site region 17452	464 bp upstream
Tssr23688	transcription start site region 23688	646 bp downstream