rs27221652 SNP Detail

Summary

• ID
  rs27221652
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34956376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCAGAGT TTAGCACACA
  GCTAAATAAT GGAGAGAGAA TGCTGTATAT GCAAACTCTA TAAAGCAGAC ACCTTTGAAA
  ACCTTCACAC ATTTTTCTGA AGAGATGGGC ATAGGAATGC TCCTTAAGTC ATTTGTAATT
  TCAAGAATAA GGCTGCAACC TCAGAAAAGA AGGAAAAGCA ATCACTAGAA CATCCATATT
  W
  TGGGATACAG TGTTGCATGG GCCATGTTTT GAAATGGCAC AAAAACCATG ATAACATTTA
  TATAAGCTTA AGAGCACACA AAAGCCAATG GCATTGCCTG CCTGCATGCT GTTGTCAAGT
  TATATAAATA CATGGTATAT AAATCAACTG TAGGTGAGTT TATATTTCCA TGCCACATGG
  TAATTCAGGA ATTGTTGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37393380	NES08733832	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27221652					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393380	NES08733832	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34956376 () rs orientation: forward

Symbol	Name	Function Class
Gm39794	predicted gene, 39794	within coordinates
Gm57428	predicted gene, 57428	within coordinates
Gm74852	predicted gene, 74852	within coordinates
Rr373034	regulatory region 373034	within coordinates
Tssr17452	transcription start site region 17452	468 bp upstream
Tssr23688	transcription start site region 23688	650 bp downstream