rs27221653 SNP Detail

Summary

• ID
  rs27221653
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34956342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCATACC CAAGATGTCA
  GTAGCTCAGC ATCTTATCCA GAGTTTAGCA CACAGCTAAA TAATGGAGAG AGAATGCTGT
  ATATGCAAAC TCTATAAAGC AGACACCTTT GAAAACCTTC ACACATTTTT CTGAAGAGAT
  GGGCATAGGA ATGCTCCTTA AGTCATTTGT AATTTCAAGA ATAAGGCTGC AACCTCAGAA
  W
  AGAAGGAAAA GCAATCACTA GAACATCCAT ATTATGGGAT ACAGTGTTGC ATGGGCCATG
  TTTTGAAATG GCACAAAAAC CATGATAACA TTTATATAAG CTTAAGAGCA CACAAAAGCC
  AATGGCATTG CCTGCCTGCA TGCTGTTGTC AAGTTATATA AATACATGGT ATATAAATCA
  ACTGTAGGTG AGTTTATATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393381	NES08733831	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27221653					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393381	NES08733831	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34956342 () rs orientation: forward

Symbol	Name	Function Class
Gm39794	predicted gene, 39794	within coordinates
Gm57428	predicted gene, 57428	within coordinates
Gm74852	predicted gene, 74852	within coordinates
Rr373034	regulatory region 373034	within coordinates
Tssr17452	transcription start site region 17452	502 bp upstream
Tssr23688	transcription start site region 23688	684 bp downstream