rs27223070 SNP Detail

Summary

• ID
  rs27223070
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31051584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTG ATTTAGCCAG ATTTTAAAGC
  W
  GCTACTTTGT GATATTTATG GTTCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37403292	NES08764428	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	T	A		T		T	T		T	T	A	T		T
ss45290836	mCV23078276	ABI	CRAMUS_MOUSE	f	SNP		T					A		T
ss320221335	CHEV_2_31017092	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27223070					SNP	A	T	T	A	T	A	A	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403292	NES08764428	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31051584 () rs orientation: forward

Symbol	Name	Function Class
Gpr107	G protein-coupled receptor 107	within coordinates
Rr372995	regulatory region 372995	within coordinates
Rr554554	regulatory region 554554	624 bp distal
Rr554555	regulatory region 554555	1771 bp proximal
Tssr23435	transcription start site region 23435	1954 bp downstream
Tssr23436	transcription start site region 23436	1991 bp downstream