rs27223082 SNP Detail

Summary

• ID
  rs27223082
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31048411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTATCC TCCCCACCCT
  CCACCCCCAG CCTGTGGACT CTCCCTCCCA CTTTGACTTT CTTAGTAACT AGACCACTGG
  CTGCTCATTT CTCAAGCTGG AAGTCTGTCA TTTCACCAAG TCACCAAGTT CTGTAAAGTA
  TTCTAAATAG CTCCCAATCC CCTGTCTTCT TGTGTGTTAT TACCACAATT GCTGCTTCCT
  S
  TGGTCCACCC TTAATGACTC CTGGACCAGT GTAGTCTCCA GCATCTTCTA GCTCATAGAG
  TTTTACATTT TACTTATTTA TTTAGCCCAC TAGGGTGATT CACTCTCTCT CTCTCTCTCT
  CTCTCTCTCT GTGTGTGCGC GCGCGCGCAC GTGTGTGTGT GTGTGTGTGT GTGTGTGTAT
  GTGTGTGTGT ATGTGTGTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403304	NES08750699	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27223082					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403304	NES08750699	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31048411 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpr107	G protein-coupled receptor 107			Intron
				Noncoding-Transcript-Variant
Rr554553	regulatory region 554553			1274 bp distal
Rr554554	regulatory region 554554			1851 bp proximal