rs27223083 SNP Detail

Summary

• ID
  rs27223083
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31048346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGTTGGG GTGGGGTGGC
  CAGACCTGTG CGTGTTCAGA TGCTCTCATT GTCTCCTGTG TTGGTTGGGC TATCCTCCCC
  ACCCTCCACC CCCAGCCTGT GGACTCTCCC TCCCACTTTG ACTTTCTTAG TAACTAGACC
  ACTGGCTGCT CATTTCTCAA GCTGGAAGTC TGTCATTTCA CCAAGTCACC AAGTTCTGTA
  R
  AGTATTCTAA ATAGCTCCCA ATCCCCTGTC TTCTTGTGTG TTATTACCAC AATTGCTGCT
  TCCTCTGGTC CACCCTTAAT GACTCCTGGA CCAGTGTAGT CTCCAGCATC TTCTAGCTCA
  TAGAGTTTTA CATTTTACTT ATTTATTTAG CCCACTAGGG TGATTCACTC TCTCTCTCTC
  TCTCTCTCTC TCTCTGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403305	NES08750698	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27223083					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403305	NES08750698	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31048346 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpr107	G protein-coupled receptor 107			Intron
				Noncoding-Transcript-Variant
Rr554553	regulatory region 554553			1209 bp distal
Rr554554	regulatory region 554554			1916 bp proximal