rs27223127 SNP Detail

Summary

• ID
  rs27223127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31019301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAACAA ATGTCTCACA
  GTGGCCATGA AAGACAATGA CAGTTCACCA TGTGACAATC TCAAGTTAGA CACGGGCATT
  CAGAGGACTG AGCCTGTGAA AACCTTCCAC CTCTACTGCC TTCATCCCTG TTTTATGATG
  GTCCAGCCTG GCTCCTTCCC TGACTTCCGG ATGCAAGTGT CTGTTCCCTC CAGCTTGCAC
  R
  TGTCAGCTAT CTACTGGTCT CCCTGTTTCC TACTCTCTCT GGAGCACCTG TCATCCTGAC
  ACCTAAGAAG GATCACCATC ATCCATCAAC GTGCCCAGAT TTCTACCAGT GGGCGCCCCA
  CCCTTTTCTC TTTTCAAGGA CAACGCCTAC CCAGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTCTGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37403349	NES08751436	PERLEGEN	MM_PANEL2	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs27223127					SNP	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403349	NES08751436	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31019301 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fnbp1	formin binding protein 1			Intron
				Noncoding-Transcript-Variant
Gm75522	predicted gene, 75522			within coordinates
Rr554531	regulatory region 554531			1731 bp distal
Rr554532	regulatory region 554532			1030 bp distal
Rr554533	regulatory region 554533			1348 bp proximal
Rr554534	regulatory region 554534			1796 bp proximal
Rr554535	regulatory region 554535			1971 bp proximal