rs27223129 SNP Detail

Summary

• ID
  rs27223129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31018732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAATATG AGGCCTTGTC
  TCAAAATAAA ACACCAAAGA GAAACAAAAA ACCCTCAGAC AGCAGTCCAA AATAGCCAAG
  CTAAAGCAGA TGTCTTCTTT ATAATCCTTC CTCAGAAATC TTATGGTATT GCTTCCACAA
  CACACATCAG TATTGACATC GTAATTGACA TCTGTTGTGG GACAGAGACA GGCTTGTGGC
  Y
  GGCTTCGCAA AATAGAATCT GTTGGCCACA TGAGGTGAGT TCTCTCAAAA TCAGATTTCT
  TTCACAAGTT GTCAAGAGGA AAATTAGACA ATAGTAGGTC TGTGGTAACA AGGATGTCAG
  TCGACCAGGT GAGCACTGAA TAGTTCTAAC CCCCATTCAT CTTGTAAGTC AGAGGCAGCC
  TGTGGGCAGC CTTCAAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403351	NES08751434	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27223129					SNP	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403351	NES08751434	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31018732 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fnbp1	formin binding protein 1			Intron
				Noncoding-Transcript-Variant
Gm75522	predicted gene, 75522			within coordinates
Rr554531	regulatory region 554531			1162 bp distal
Rr554532	regulatory region 554532			461 bp distal
Rr554533	regulatory region 554533			1917 bp proximal