rs27223131 SNP Detail

Summary

• ID
  rs27223131
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31016371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCTGTC TCCACAGTGG
  CGGGATTACA GGCACCCACC ACCATGGCCG GCTTCTATGG GTGCTGGGTA TCCAAACTCA
  GGTCGGCAGC TCTTGTGAGG CAAGAACTTA ACTGGCTGAC CCATCGTCCA ATCACAACCA
  ACAAGTTTTG ACTTGGCAAA ATAGACCTGG GTATTTTTAC CGGGAGAGTC GTGCCCAGTA
  M
  ACTAATGCCT TCAGGAGGCC TAATAGCCTA CGGAGTATGT CTAATGATGC TGTTTATGTG
  CCACTGTGCA ATGAGCCGAC CTCTGCAACC CCCCTATTAA CATTATTAGC GTGTCTTTGA
  GTTGCAGTGT GGGAACTGAA CATAAAAGTT CTAAAGAGTT TCCAAGCTCA GAAGCCAGCA
  TAACTGCCAT CAGTCACATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403353	NES08751452	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27223131					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403353	NES08751452	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31016371 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fnbp1	formin binding protein 1			Intron
				Noncoding-Transcript-Variant
Gm75522	predicted gene, 75522			842 bp upstream
Rr554530	regulatory region 554530			1278 bp distal
Rr554531	regulatory region 554531			1004 bp proximal
Rr554532	regulatory region 554532			1641 bp proximal