rs27228820 SNP Detail

Summary

• ID
  rs27228820
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27936806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGCAGA CGCCTTCTCT
  GTGCTGAAGG CCAGTGTGCT GTGTGTGATT CCATCACACA CGTGCCAGGA GGGGCTTATA
  GCCCTCTTGC TTGAGGCCTT AAAGGATGCA GCTGTGGCGG AAGAAAAGCA TAGCTGGGTA
  GTGCCTTGTT CCACACTGAT TGGCATCACA GGGTCTCCCA GTGCCCAGGA AAAAGGATGA
  W
  TTAAGGAACA GGTTTGCAGA TTAATGAAGA ACATATTCAG AGCTGTGAAA GCCATGCAAT
  TGGGGTTTAG GGGCAGAAAC TCAGGGCGTG TGGATGGCAG TAGCTCCCTC CCATAGATAG
  CTGAGTCACA GAAGGCCACA CAGGACATGA GGCACAGCTA GAACATGGCA GTGGCTTGGA
  TCACTTCTGT ATATTTAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37412347	NES08771998	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27228820					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37412347	NES08771998	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27936806 () rs orientation: forward

Symbol	Name	Function Class
Rr553716	regulatory region 553716	1559 bp distal