rs27228837 SNP Detail

Summary

• ID
  rs27228837
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27920785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGTTCC CAGTTAGAAC
  CAGGAGCTGC CTAAGACGGC CTCTCACACG GAGGATGCAG GGAATCAATC CACTAGAGCA
  GGTCCTCTTG AATTCAACTT GGAACAGTAC TAGGGCTTCA GGTCCTTCTG TGGGGCCACC
  CCTGCCTCTG CTGTGGCATG TGTCCTCTCT CAAGTCAGTC GTGTGTCCTT CCAGGAGCAC
  Y
  GGATACCCGG ACTGCCGGTT GGTATGCATT TTTCCTTTGC AGAGTCTGAC TGTGGGTTTT
  TCTCAAGCTG TCTTCAAGGA AGTGGAGCGT CCTTGGTAGC TTGGGAACCC TTAGGGTGTC
  CCACCATCAT GGTGGAAAGG AACAAGGTCC TGGGCCTGCC TCCCCCACCC TATCCCTTCC
  CCCTATTACT ATTGAAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37412364	NES08772451	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C		C	T	C	T
ss146392190	ENSMUSSNP1953845	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27228837					SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37412364	NES08772451	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27920785 () rs orientation: forward

Symbol	Name	Function Class
Col5a1	collagen, type V, alpha 1	Intron
Gm13372	predicted gene 13372	within coordinates
Rr553711	regulatory region 553711	1016 bp proximal
Rr553712	regulatory region 553712	1344 bp proximal
Tssr16891	transcription start site region 16891	1282 bp upstream
Tssr16892	transcription start site region 16892	1314 bp upstream
Tssr16893	transcription start site region 16893	1997 bp upstream