rs27228839 SNP Detail

Summary

• ID
  rs27228839
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27920613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGAGTCC AGGTCCCCCA
  GGGGCAGCCA CCCAATTGCT AGCATTGCTA AGGGAGCAAA TGGTCATAGA ATACCCATGT
  CTAGGCACGC CCCTGTCTGA GTTGGTTATC AGAGACAGAG GCCAGGGACC ATTCAAGGCA
  AACCAGCCTG CCTTCAGGCT ACAGTGCCCG GCTCCCAGTT CCCAGTTAGA ACCAGGAGCT
  K
  CCTAAGACGG CCTCTCACAC GGAGGATGCA GGGAATCAAT CCACTAGAGC AGGTCCTCTT
  GAATTCAACT TGGAACAGTA CTAGGGCTTC AGGTCCTTCT GTGGGGCCAC CCCTGCCTCT
  GCTGTGGCAT GTGTCCTCTC TCAAGTCAGT CGTGTGTCCT TCCAGGAGCA CTGGATACCC
  GGACTGCCGG TTGGTATGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37412366	NES08772449	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27228839					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37412366	NES08772449	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27920613 () rs orientation: forward

Symbol	Name	Function Class
Col5a1	collagen, type V, alpha 1	Intron
Gm13372	predicted gene 13372	within coordinates
Rr553711	regulatory region 553711	1188 bp proximal
Rr553712	regulatory region 553712	1516 bp proximal
Tssr16891	transcription start site region 16891	1454 bp upstream
Tssr16892	transcription start site region 16892	1486 bp upstream