rs27228841 SNP Detail

Summary

• ID
  rs27228841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27920431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTTGCT CTCTTGAGAG
  GAAAATGGTT GTCACACAGA AGGACCTGTC AGGAGGAAGA CCCAGTAGCA GTGACAGGAG
  ATCTGAGGGG TCAGACAAGG AAACTGCCCA GGTCCGAGAT CCTTTGGGTC CTGTCTGCCC
  AAGCTTGACC TGGCTTCTCC CCTCTCCAAA TGGCTTCCAC CTGGTGGAGT CCAGGTCCCC
  Y
  AGGGGCAGCC ACCCAATTGC TAGCATTGCT AAGGGAGCAA ATGGTCATAG AATACCCATG
  TCTAGGCACG CCCCTGTCTG AGTTGGTTAT CAGAGACAGA GGCCAGGGAC CATTCAAGGC
  AAACCAGCCT GCCTTCAGGC TACAGTGCCC GGCTCCCAGT TCCCAGTTAG AACCAGGAGC
  TGCCTAAGAC GGCCTCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37412368	NES08772447	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27228841					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37412368	NES08772447	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27920431 () rs orientation: forward

Symbol	Name	Function Class
Col5a1	collagen, type V, alpha 1	Intron
Gm13372	predicted gene 13372	within coordinates
Rr553711	regulatory region 553711	1370 bp proximal
Rr553712	regulatory region 553712	1698 bp proximal
Tssr16891	transcription start site region 16891	1636 bp upstream
Tssr16892	transcription start site region 16892	1668 bp upstream