rs27228842 SNP Detail

Summary

• ID
  rs27228842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27920232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGTGGC TTCCAGGACT
  ATCCTGCCTC CACCTCTGTC ATCCCTCAGC CCGGAGGCAT GCCTGGCTTT CTGTCAGGGG
  TCCCAAGGAG CTCACCTCTG CACACAAGCT GTGGCCTGGA CTCTTTGGGC TTCAGCCCCG
  CAGCTTCTCT TCCCCTGCTG GGAGCCGGGC ATCCTCATCT GTTGCTTCCT CTCTTCTGCT
  Y
  CTTTTGCTCT CTTGAGAGGA AAATGGTTGT CACACAGAAG GACCTGTCAG GAGGAAGACC
  CAGTAGCAGT GACAGGAGAT CTGAGGGGTC AGACAAGGAA ACTGCCCAGG TCCGAGATCC
  TTTGGGTCCT GTCTGCCCAA GCTTGACCTG GCTTCTCCCC TCTCCAAATG GCTTCCACCT
  GGTGGAGTCC AGGTCCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37412369	NES08772446	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27228842					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37412369	NES08772446	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27920232 () rs orientation: forward

Symbol	Name	Function Class
Col5a1	collagen, type V, alpha 1	Intron
Gm13372	predicted gene 13372	within coordinates
Rr553711	regulatory region 553711	1569 bp proximal
Rr553712	regulatory region 553712	1897 bp proximal
Tssr16891	transcription start site region 16891	1835 bp upstream
Tssr16892	transcription start site region 16892	1867 bp upstream