rs27231611 SNP Detail

Summary

• ID
  rs27231611
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:134679580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATTCACA AATGTATTTC
  TTAGCTGTTA AGTACAATTT TGGTTAATGT CAAACCTTCC ACCTTTCAAT AAAACTCTAT
  GTGTAAGTTT TTTTTAATTC ACTTAATCTT TCTGTTAATA GCAAGTACAG CGAATACCTG
  GAGCATTTTA ATGTTCCACT ATTCAGGGTG TTAAACTAAT TGAAGCATGG TTTGGAACTC
  Y
  TGGCAGGTTT ATAGAAAATT AAAATTAACT AGCTTTTTTG GCTATATATA TATATATATA
  TATATATATA TATATATATA TATATATGTG TGTGTGTGTA TATATATATA TATATATATA
  TATATATATA TATATATACA TATACATGTG AACAGGTTTT AAATGGAGTT ATGTAATGGG
  AGTGGAGAGC AATGACTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	WSB/EiJ
ss37457530	NES08968991	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	WSB/EiJ
rs27231611					SNP	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37457530	NES08968991	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134679580 () rs orientation: forward

Symbol	Name	Function Class
Plcb1	phospholipase C, beta 1	Intron
Rr565690	regulatory region 565690	1425 bp distal
Rr565691	regulatory region 565691	1260 bp distal
Rr565692	regulatory region 565692	604 bp proximal