rs27233268 SNP Detail

Summary

• ID
  rs27233268
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24779108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGGATG TATACTGGCC
  CTGTCCCACA CCCGTCAAGC TCAATTTGAG TTATGAGAGC AGGCCAACTA AATGTGGTTT
  TCCACCTTCA GACTAGGCAA CAGTGAAAGC ACACTGACAA AAGCAAAGGT ACAGAACCAA
  CCTCTGAGGG AAAACCATCT TCAGCACCTT TTCCAAAGCT CACCGCCCCC TTGTGGTCGT
  K
  AATGTGGATT ATTAATTAGA CAGGCTGGAC ATGTTTATGA GGGATTTTCT AGGTTAGGTT
  AATTGAGGTG GTGTGACAGC TCTAATTGTC AACTAGACAC AATCTAGAAT CACCAGAGAA
  GAGAGCCTAA ATGTGGCACT GTCCACAATG GGATAGTGTC GGAACACAGT CCAAAGAATG
  GAGTCATACG AAGGAAATTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37424294	NES08777060	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27233268					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37424294	NES08777060	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24779108 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ehmt1	euchromatic histone methyltransferase 1			Intron
				Noncoding-Transcript-Variant
Gm37139	predicted gene, 37139			352 bp downstream
Rr552926	regulatory region 552926			within coordinates
Rr552927	regulatory region 552927			1430 bp proximal