rs27234469 SNP Detail

Summary

• ID
  rs27234469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139287238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGATGCA CATAGCTTTG
  AGATTTGGTG TGGCTGGTGA CACATGATAG ATTCTTAAAA GCAAGATCAC TGGGATAAAG
  GACACATGTA TTTTTATTTT ATCAAGTGTT ACACCTCTTC TATGTAGTAA TATGAACTTT
  AAAAGATTAA AATCTATCAT CTACTGCTTG TCAGAATCCC AAAATTCTTA GACCAGCCTG
  R
  AGCCCAGACT AAGAAAATAC GAATTTCTAC ATTGAAGTCC TTAGGGGCTT TTTATTTTGT
  CTGTCAAGAT AACCTAATAT CAAATCAACC AGAAAACATT CTTATTTTAT ATTTGCTTTC
  AAAGTCCTCC TACATCTTCT AGACAACTTT ATTTCCTTTA TTAGAAAAAA ATTTTTTTGC
  TTGAAACTTC CTCTTTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37440998	NES08957567	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27234469					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37440998	NES08957567	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139287238 () rs orientation: forward

Symbol	Name	Function Class
D2Mit339	DNA segment, Chr 2, Massachusetts Institute of Technology 339	568 bp distal