rs27234472 SNP Detail

Summary

• ID
  rs27234472
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139285849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTATTAA CCTTAGACAA
  GACACCATGC CAGACATCCA AATCTATCTT AGTGAAGCAG TGAATTTGCT GGAGAGTTAC
  TAGGGAAGCA TGTTTAAGGT ATGATACCTT CTTTATAAAA TTTATTTTCA GAAATTATGG
  AATAAATTCT TACTCAAATG AATTGATGCA AAGATTCACT AAGTAAACAA TATTTATCCA
  R
  TTATTTCCTA GATATAGTCA GAGAAAGATT TTTGATTTGG TTTAGTTTGA TCTAGTTTGG
  TTAGTTGGTT TTGTTTTGTT TTGCTTATTT GTTTGTTTGT TTGCTTGCTT GCTTGCTTGC
  TTACTTGCTT GCTTTAGCAG CTGTGGCAGG GGATTCCCTG AATGCTGTCT GTCTCTGTCT
  CTGTCTCTGT CTCTGTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37441001	NES08957579	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27234472					SNP	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37441001	NES08957579	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139285849 () rs orientation: forward

Symbol	Name	Function Class
D2Mit339	DNA segment, Chr 2, Massachusetts Institute of Technology 339	682 bp proximal