rs27238756 SNP Detail

Summary

• ID
  rs27238756
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:134242878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGATAAA TGTCTTGAGT
  TATTGCCTCC TTGAAATACG AATAGCATCC TACATTTGAG ATGTGTTAGT TACCACATAC
  ACTTAAGATC TGGAAGGTAT CATCTGGCAC TCTGACTTTT CATCATCTGA GCTTAGTTAA
  GAGCTTTTAG GAATCAAGGA TACCTACTAG AGCAGTCCCC ATGTTCCACT TTAGCAAAAA
  M
  TTTCACTTAA GGAAATAAGT GCAGTTCACT TATGACCAGG CAGAAACAGT TATATTTAGG
  GACTAGAGAG ATGGCTCAGC AGTTCAGGTG GGTTGATGCT CACTGTTAGG TCAACAGAAA
  CAAGTATGAA AGAGTTAATT CTGGGTGAGA GAAACTCAAA AGAAGTTTTC TGTAGCTCTG
  GTAAAACTGT GAATAAATCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37458475	NES08979221	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27238756					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37458475	NES08979221	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134242878 () rs orientation: forward

Symbol	Name	Function Class
Gm54132	predicted gene, 54132	191 bp downstream