rs27238766 SNP Detail

Summary

• ID
  rs27238766
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:134241023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCTTCAC AGTAATGAAA
  CTCTAAGACA AATACCTTCT TCAAAAATTT CTCATTTCCA GAAAATCATA TAAATGTTTA
  CAATCCAAGG TCTCTGTGGG AAATAAAGCT GCTGGCAGAA AATATTTCTG ACTTGATTTG
  AACTCTATCA ACTTCTGTGC AGAGTTTAGA CCATCTTTAC TGTGAGAGAC TCTCGTAAAA
  W
  CCCAAACTCC TCACCACACT ATCCAGTGGC GAGGGGAAGC CCGTGAACAT GAATGGGGAT
  TTGTATGAAT TTAGCAGTAG TAAACTGGGA TTACAGTAAA TTTTTCTGAA TCGTGATCAC
  CGTACACTTG AAGGGACCCT AGTATTTTAG TGTGATGTCT GGATCAGTAT GTATTAACTC
  CACCAAACAA CCCAAGAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37458485	NES08979270	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27238766					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37458485	NES08979270	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134241023 () rs orientation: forward

Symbol	Name	Function Class
Gm54132	predicted gene, 54132	725 bp upstream
Rr565659	regulatory region 565659	591 bp proximal