rs27241969 SNP Detail

Summary

• ID
  rs27241969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131798498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACTCTGA AGACCATCCA
  GATAGCCCGA AACCATCAAC ATTGTCTAGT CCAGACCTGG TCCTTGGTGT TAAACATGTG
  GAAGAGAAAT CTGAGCACTA AACAGTGGGC CTGTGGGCCT CCTACACAGA GGGCAGGGTC
  TGCAGGCTCC GTGCCTCCCA GTAAGAGGGG ACTCCTGGGG TAAAGTGTGT CCCTGATCTT
  Y
  TGACAGACTC AATAAAGTTG ACCATGCCAG TCCTGCATTC CAGTGAGAAT GTTCCAGGTT
  GCCAGGCTCA TTAGGAACAG GATGGAGCCC TGTCGCAGAA GCCATCCTTT CCTCTCAGCT
  TAGGCAAAAC ACCAGCTTCT CTCTCAAGAC CCTTGTGCCC CACATGACCC AGAAGGCACC
  TGCCAGCCTC CAGAACACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37467388	NES08995169	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27241969					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467388	NES08995169	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131798498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12298	CpG island 12298	1013 bp distal
Prn	prion protein readthrough transcript	448 bp downstream
Prnd	prion like protein doppel	448 bp downstream
Rr373880	regulatory region 373880	172 bp downstream
Tssr26420	transcription start site region 26420	1570 bp upstream