rs27241971 SNP Detail

Summary

• ID
  rs27241971
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131798380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCATTCT CAGCATCCTG
  AAAATGATCT CTTTGAAGTG CGAGAAGCTG AAGATCACTC CTTCCAACAC TGCTTAAGCA
  TCTGCCTTCC TCTGCAGAGG GCGCACAAAA GCTTCCTGAG GACTCTGAAG ACCATCCAGA
  TAGCCCGAAA CCATCAACAT TGTCTAGTCC AGACCTGGTC CTTGGTGTTA AACATGTGGA
  M
  GAGAAATCTG AGCACTAAAC AGTGGGCCTG TGGGCCTCCT ACACAGAGGG CAGGGTCTGC
  AGGCTCCGTG CCTCCCAGTA AGAGGGGACT CCTGGGGTAA AGTGTGTCCC TGATCTTCTG
  ACAGACTCAA TAAAGTTGAC CATGCCAGTC CTGCATTCCA GTGAGAATGT TCCAGGTTGC
  CAGGCTCATT AGGAACAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37467390	NES08995167	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27241971					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467390	NES08995167	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131798380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12298	CpG island 12298	895 bp distal
Prn	prion protein readthrough transcript	330 bp downstream
Prnd	prion like protein doppel	330 bp downstream
Rr373880	regulatory region 373880	54 bp downstream
Tssr26420	transcription start site region 26420	1452 bp upstream