rs27241981 SNP Detail

Summary

• ID
  rs27241981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131796938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGACTCCA GGAGTTGCTG
  AGCGGGATCT GGAAATAACT GCTACTGGGT GTAGTCTCTT GTAAACGGAG TATCTGCCAG
  GGGGGTCGGG TATTGTCAAA GGATTCATCT GCAACATTCC AGAACACGAG TGCTGATAGC
  AGTACTTCGA GTGCTGAGTT CCCAGTGCAA TCGGTTCTTC TCAAGGACAC CTCTGGCAGG
  Y
  GTCACATGGT AAAGGGACAT GAAGCAGGGC GGAACCTTTA CCACTGGACA GACAGCCCAG
  AGAAACCAGC CTGCTGCAGT ACGCCACTGC TGCCAAGACA CACCTCCTCA GTCTACTGAT
  CCTAAACCAG AGAGCAGGCC CAGATCACAC AGTTTACCCC TTGCACGCCA TTTTAAATAT
  CAGACAATAA AGAAGGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37467400	NES08995146	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27241981					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467400	NES08995146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131796938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12297	CpG island 12297	1469 bp distal
Cpgi12298	CpG island 12298	325 bp proximal
Prn	prion protein readthrough transcript	within coordinates
Prnd	prion like protein doppel	within coordinates
Rr373880	regulatory region 373880	within coordinates
Tssr26420	transcription start site region 26420	10 bp upstream