rs27241985 SNP Detail

Summary

• ID
  rs27241985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131796564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGGATT GCAGACATGC
  CACCAAGCCC AATATGTGTT TACTTCTGAT GTCCCCTGGC CCTATGTGCA TGTGTGTTCT
  TAGGCATCTT AAGATGCTCA CTGCGCACAG AGCTCTCTGC AAACACTGTC TGTTTTTAAA
  ACCCACTTTG GTAAAAGCTA ATCTCCGTGA ATCATTTAAC ACTCCCAAAA TATAATTATT
  R
  GCCAAAAAGC CTAAGAGAAA TGTCATCTTT AGGAAGACCC AATAAAGAAG TGGTGTCTAC
  CATCATAAGA ACTGATATGC CACTTTGTGA ACTTAAATAT ATATTAAAAA TATGAATGTT
  ACCTAAATGT TTAAAAATCT TTTAAGATTC TTCCACAGGT TTTCCTCACC TTTCAGGACT
  CCAGGAGTTG CTGAGCGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37467404	NES08995134	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27241985					SNP	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467404	NES08995134	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131796564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12297	CpG island 12297	1095 bp distal
Cpgi12298	CpG island 12298	699 bp proximal
Prn	prion protein readthrough transcript	within coordinates
Prnd	prion like protein doppel	within coordinates
Rr373880	regulatory region 373880	within coordinates
Tssr26420	transcription start site region 26420	349 bp downstream