rs27241989 SNP Detail

Summary

• ID
  rs27241989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131796098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCCCTCC AAGACTCAGG
  TCCAAGTGCA GTCCCGAATG TGGACTGAAA TGTGGAAGTC ACACCCTGAA CTAAGTGGGA
  AGCCCTGAGC GACAACCGTG CACCTTGACA CCTTACGTGA GACAATATAA CAAAAATTAA
  GCTAAAGTAG ACATGACACT AGACAACGGC TCAGAAATCA GATTGTAGGG AAATTTGCTA
  Y
  GCACCTCCCG GAGAGCAGCT TCAGGGCAGG ATGTGTTTGT GGTGTCTAGA TGCGTCTTCA
  CAAGGACTGG TGTTTGCTGG TTGGGCCCCT GCAATGTCTG CAAAGTTAAG AAAACCTTTT
  TAAGTGACAC ATTGTGCGTG CGTGTGCATG CCTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTTTATTTG TTTTCTAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37467408	NES08995201	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27241989					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467408	NES08995201	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131796098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12297	CpG island 12297	629 bp distal
Cpgi12298	CpG island 12298	1165 bp proximal
Prn	prion protein readthrough transcript	within coordinates
Prnd	prion like protein doppel	within coordinates
Rr373880	regulatory region 373880	211 bp upstream
Tssr26420	transcription start site region 26420	815 bp downstream