rs27242869 SNP Detail

Summary

• ID
  rs27242869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27620892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTGATT CTAGCCACAC
  CTGTCACCAG CAGGCCCAAC CATACTACCA TTCATGGCTG TATGGGAGGT AGCTGCTAGA
  CAAAGCACTG ATTCCCGTGC CTCCTGGTGC CCCTCCCTGG ACAGCCCCAA ACTCACTGAG
  TATGGTCAAG AGAACCCAAA GCATAGTCTC TTTGCCACCT GCAGAACTTC TCCAGCCTCC
  R
  TCTGCACAAT GGAGTAGAAC AGGGTGTTCT TCAGGTGATG GTGGTGATGG TGATGATGGT
  GTTATTGATA GTTATGATGT TGGTGATGCT GCTGTTGTTG ATGGTGGTGG TGATTGTGAT
  GTTGATGGTG AGGATGTTGA TTGGGATAGT GGTGGTGATG CTGATTGTGA TGATGGTGGT
  GATGATGGTG GTGACCATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37414355	NES08775569	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27242869					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37414355	NES08775569	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27620892 () rs orientation: forward

Symbol	Name	Function Class
Rr553630	regulatory region 553630	542 bp distal
Rr553631	regulatory region 553631	659 bp distal
Rxra	retinoid X receptor alpha	Intron