rs27242871 SNP Detail

Summary

• ID
  rs27242871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27620429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCAGGCA AAGGAAAAGT
  GCCATACAGC CAGGAGCTGG AGGGGGTCCA GCTGGAATCA CCTGGCTCCT GGACAGAGTG
  TGCCCTCTAT ATAGATACGG ATATATCAAT GGCTAGCATG CAGGCACATC TCTAAGCATG
  AAGAGTTTGG GATTGGAGAT GGCCTGCAGC AATTAGACAT TCCAGACAGT GACCACCATC
  R
  TAGGTGCAGA CGGTAATGAC ACTGACTGGC AAGTGTCAGG GGTGGGGTGT GAAGCCTTGT
  GCAGCACCTG TGGACTGTGA GCTTCAGGAA GAGTTGGCAT GGTGGCTACC TGCCTGTCAG
  CACCATGGCC TTCACCCCTG AATATACTGG TATCTTTACT TCTCAACTCT TACGTGAATG
  CTGCCTGGCA CCGACGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37414357	NES08775567	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G
ss45286922	mCV24547320	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	G
ss146390368	ENSMUSSNP4569333	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27242871					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37414357	NES08775567	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27620429 () rs orientation: forward

Symbol	Name	Function Class
Rr553630	regulatory region 553630	79 bp distal
Rr553631	regulatory region 553631	196 bp distal
Rxra	retinoid X receptor alpha	Intron
Tssr16877	transcription start site region 16877	1555 bp downstream