rs27242873 SNP Detail

Summary

• ID
  rs27242873
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27620322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTCAGGT TAGAGCCGGG
  CAGGGGGTGT CTGCAGCGGG CATGCTGGTA CCTGATAAGC CTGAGGCGTG AACAGCTTCG
  AGACTTCCCT CTGCTGCCCC CTAGTTGTAT TCAGGCAAAG GAAAAGTGCC ATACAGCCAG
  GAGCTGGAGG GGGTCCAGCT GGAATCACCT GGCTCCTGGA CAGAGTGTGC CCTCTATATA
  S
  ATACGGATAT ATCAATGGCT AGCATGCAGG CACATCTCTA AGCATGAAGA GTTTGGGATT
  GGAGATGGCC TGCAGCAATT AGACATTCCA GACAGTGACC ACCATCGTAG GTGCAGACGG
  TAATGACACT GACTGGCAAG TGTCAGGGGT GGGGTGTGAA GCCTTGTGCA GCACCTGTGG
  ACTGTGAGCT TCAGGAAGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37414359	NES08775565	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27242873					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37414359	NES08775565	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27620322 () rs orientation: forward

Symbol	Name	Function Class
Rr553630	regulatory region 553630	within coordinates
Rr553631	regulatory region 553631	89 bp distal
Rxra	retinoid X receptor alpha	Intron
Tssr16877	transcription start site region 16877	1448 bp downstream