rs27243199 SNP Detail

Summary

• ID
  rs27243199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131935878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCATGCTT TGGAATGCCA
  CACTGGTAGC TGGCAGTTTT GATTTCAGAT ATCCACCTTA GGTACACTTA CCTTATATTT
  TTATTCCTAT TTAATAGGTG AAAAGCTGAT ACCCAGAGAG TCATGGTAAT TCCTTAGAGT
  CTGAGTCACC TCTGTAATCA GACTTGACTT TTGGTCCTCA AGCTCTTAAC CACTGTTCTC
  R
  AACATTCTGG CCAAGGCTTT TACAAATACC TAGATAATGA CTCTTAAGAG CTTTTAACCT
  TAATTGCTAC TAAGACAATT AAAACCTAGT AATTATGACT CTTCCATTAC AAAACAAACA
  TACAGACACC CCCAAACCCC TGCAGAAACA GGGCCGGGCA GTAGGAAGGG GTAGCATGGG
  TACCTTCTCT GCAATGCCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37466418	NES08992145	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27243199					SNP	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37466418	NES08992145	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131935878 () rs orientation: forward

Symbol	Name	Function Class
Rr38520	regulatory region 38520	1478 bp distal
Rr38521	regulatory region 38521	923 bp proximal
Rr46448	regulatory region 46448	278 bp distal
Rr58489	regulatory region 58489	110 bp proximal
Rr397326	regulatory region 397326	1866 bp downstream
Rr397327	regulatory region 397327	558 bp upstream
Slc23a2	solute carrier family 23 (nucleobase transporters), member 2	within coordinates
Tssr20295	transcription start site region 20295	760 bp upstream
Tssr26446	transcription start site region 26446	217 bp downstream
Tssr26447	transcription start site region 26447	629 bp downstream