rs27243200 SNP Detail

Summary

• ID
  rs27243200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131935190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTGCAAT TCCTGAAACA
  CTTCTACACA GACAGGACTA AGGACATACT GGGCTCACCA CACAAGGTAA ATTCCACACT
  GTCCTATATC TTACACAAAG GAATAAAACC AAGGGCAAAA TAAAGCCCTT CCTTAGTATA
  TGCTAGTTTG CCTAATGAAT GCCCCTGAAG GCCCATGTGT TTAAGGCTTC ATCAAGGGTG
  R
  CAACAGCCTA AGATACCATG GACCTTTAAA ACATAGACTT TAGATAACAC TGGAAGCTGG
  GGTAGAGGAC TGTAAACAAA GTCCACTTTA GCCAAAACAG ACAGACAGGC AGGCATACAA
  ACAAAGGCAC AGACACAAAG AGTTGAACTC TTGAAATGCA TTGTGGGCCC CTGCTTGCCC
  CTGCCCCCTT TCTGTTTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37466419	NES08992176	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27243200					SNP	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37466419	NES08992176	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131935190 () rs orientation: forward

Symbol	Name	Function Class
Rr38520	regulatory region 38520	790 bp distal
Rr38521	regulatory region 38521	1611 bp proximal
Rr46448	regulatory region 46448	within coordinates
Rr58489	regulatory region 58489	798 bp proximal
Rr397326	regulatory region 397326	1178 bp downstream
Rr397327	regulatory region 397327	1246 bp upstream
Slc23a2	solute carrier family 23 (nucleobase transporters), member 2	within coordinates
Tssr20295	transcription start site region 20295	1448 bp upstream
Tssr26446	transcription start site region 26446	905 bp downstream
Tssr26447	transcription start site region 26447	1317 bp downstream