rs27243201 SNP Detail

Summary

• ID
  rs27243201
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131935030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACAACTGC GAGGATGAGA ACTGAATGGA TTCTACAAAT
  CATTAAGAAA CACCTGAGCC CAACTGCAAT TCCTGAAACA CTTCTACACA GACAGGACTA
  W
  GGACATACTG GGCTCACCAC ACAAGGTAAA TTCCACACTG TCCTATATCT TACACAAAGG
  AATAAAACCA AGGGCAAAAT AAAGCCCTTC CTTAGTATAT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37466420	NES08992175	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27243201					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37466420	NES08992175	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131935030 () rs orientation: forward

Symbol	Name	Function Class
Rr38520	regulatory region 38520	630 bp distal
Rr38521	regulatory region 38521	1771 bp proximal
Rr46448	regulatory region 46448	within coordinates
Rr58489	regulatory region 58489	958 bp proximal
Rr397326	regulatory region 397326	1018 bp downstream
Rr397327	regulatory region 397327	1406 bp upstream
Slc23a2	solute carrier family 23 (nucleobase transporters), member 2	within coordinates
Tssr20295	transcription start site region 20295	1608 bp upstream
Tssr26446	transcription start site region 26446	1065 bp downstream
Tssr26447	transcription start site region 26447	1477 bp downstream