rs27244481 SNP Detail

Summary

• ID
  rs27244481
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145400794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTGGTGG TGGTGGCGCA
  CACCTTTAAT CTGCATTTGG GAGGCAGAGG TAGGCGGATT TCTGAGTTTG AGGCCAGTCT
  GGTCTACAGA GTGAGTTCCA GGACTGCACA GAGAAACCCT GTCTTGAAAA ACAAAACAAA
  ACAGAAAAAA GAATGGAGAA AATATAAGAA ACCTCTTAAG ATATCAAATG CACCAATATC
  W
  GCATTATAGA AAAATCAAAG AAAGAATTTG AATAATGTCT AAATTGCTTT CAAATTTGAA
  GAAGTATGTA TATAAATTTG GGGAGTTTAA ATAATTAATG GTTACATAAC TAATCAAATC
  AGGCTGAGAT GTAGCTAAGT GGTAGAGCAC TTGGCTAGCA TTGAGAGGCC CTGAGTTTGA
  ATTGCAACAA TGAAAAATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37477503	NES08928679	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27244481					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37477503	NES08928679	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145400794 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566544	regulatory region 566544			1029 bp distal
Rr566545	regulatory region 566545			1127 bp distal
Slc24a3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3			Intron
				Noncoding-Transcript-Variant