rs27244483 SNP Detail

Summary

• ID
  rs27244483
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145399658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCACATGC TACAGTTGCT TGGGGACCTC TGAGAACAAT
  GGCAAGCCCT TCCATGGTCC ACACCACCAG AGAGATTTTA TTATCACAAC TGACACTAGA
  K
  GGAGCACTTG AGTAGAAACA GGCTGAGCTC TGCATCTGGC TGGGGAATAG ACCTACAAGC
  AGAGAAGACA CAAGAAACAT TGAGAATCTC TCCTGGGGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37477505	NES08928780	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	G	G	T	G	T	T	G	T	G	G
ss147835177	ENSMUSSNP4664520	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27244483					SNP	T	T	G	T	G	T	G	G	T	G	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37477505	NES08928780	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145399658 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566543	regulatory region 566543			1638 bp distal
Rr566544	regulatory region 566544			within coordinates
Rr566545	regulatory region 566545			within coordinates
Slc24a3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3			Intron
				Noncoding-Transcript-Variant