rs27244484 SNP Detail

Summary

• ID
  rs27244484
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145399613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTGGTTCT GTCTTGCCTG ACACAGAACA CTGAAGAAGA
  AAGATGACCA CATGCTACAG TTGCTTGGGG ACCTCTGAGA ACAATGGCAA GCCCTTCCAT
  S
  GTCCACACCA CCAGAGAGAT TTTATTATCA CAACTGACAC TAGAGGGAGC ACTTGAGTAG
  AAACAGGCTG AGCTCTGCAT CTGGCTGGGG AATAGACCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37477506	NES08928779	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	C		G	C	G	C	G
ss147835168	ENSMUSSNP3694340	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27244484					SNP	C	G	G	G	C	C	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37477506	NES08928779	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145399613 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566543	regulatory region 566543			1593 bp distal
Rr566544	regulatory region 566544			within coordinates
Rr566545	regulatory region 566545			33 bp proximal
Slc24a3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3			Intron
				Noncoding-Transcript-Variant