rs27244496 SNP Detail

Summary

• ID
  rs27244496
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145397785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATCAAT AACTCCCTTT
  GCAGTGAGAT GTCATTATAT ACCCTGTGAC ATGATGAGAC AATATTAAAA GTACGCTCAT
  GTCATATTTT AACTTCATCC AGTTATTACC AATCGCATAT AACACCATCA GTTCAGTGGA
  AAAACTCACA GGATCTGAAT TTACTAAGAA AGCCCCTATT TACATCCATC TTAGGTCAGT
  M
  CCACCTGTCA ACCCCTTGTG AAGGGATGAG GTTGCAGCTG TCAGTAACAG CTGCAACAAT
  AACACTAGGT CTCTATAGTG TCCTTCTTTA TGGGAGCCAA TGTGAATACA AACAATATAC
  TAAGTCATTT ATCCCTTAAG GAATGTGTTT ATTCAGGAAC AGCTGGCCAC AAGTGAATGC
  AAGTGTGTGA CTTCCCAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37477518	NES08928760	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27244496					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37477518	NES08928760	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145397785 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm14092	predicted gene 14092			883 bp upstream
Rr566543	regulatory region 566543			within coordinates
Rr566544	regulatory region 566544			1758 bp proximal
Rr566545	regulatory region 566545			1861 bp proximal
Slc24a3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3			Intron
				Noncoding-Transcript-Variant