rs27246377 SNP Detail

Summary

• ID
  rs27246377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:149508821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGAGTG CAAAACACAG
  AGAGGGAAAG ATCAACTGTG ATCCTGAGAA AATCCTTACC TTACACCAAA TTTGATAGGG
  TGTCTTCATT GAAGGAAACA CAGAAACCAA GGAAGGCAGT ATCTGTGCTC AGTTTCTGGG
  GCTGCTGCTG ACTTAAGAGT ATATGTGCCC ATCAGATATG ATGCCAGCAT GGGACTTAGG
  Y
  GAGACAGGAG ATCACCCACA CAGTACCAGT GGCCACAAAA CCACACATCT TATAAAAGTA
  CTTGATAGTC ATGATCATCT TGTCCAATCA ACATATCATG TTAAAATCCA ACAAGAACTT
  GGATATTTCC AGGTAATGTG TACAAATATA AATTCAACTT CAGTTAAGTC CCAATCCAAA
  TTGGAGTAAT CAATTTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37487596	NES08918744	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27246377					SNP	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37487596	NES08918744	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:149508821 () rs orientation: forward

Symbol	Name	Function Class
Gm53264	predicted gene, 53264	within coordinates
Rr566994	regulatory region 566994	163 bp distal