rs27246378 SNP Detail

Summary

• ID
  rs27246378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:149508586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAATTCT TCCCAGAATA
  GATATGTGAT GCATACAAAC TCTATGTAAC AGAAGAAAAG GGAGGCGGGG AGACAAGACA
  GATTCTGAGA GGGGCTGGTA GAGAAGCACT GCTGCCAAGA GCACTTTGAG TCATCTGTCT
  CATTCTGCGC TCCCTGTAAA GGAGCTTGGC TGCAGGAGCT ACGGCTTTTG CATATCAATG
  Y
  AGGCCTGGAA ATGTGAGGCA GAAATGAGTT GAAGAAACAG AGTGCAAAAC ACAGAGAGGG
  AAAGATCAAC TGTGATCCTG AGAAAATCCT TACCTTACAC CAAATTTGAT AGGGTGTCTT
  CATTGAAGGA AACACAGAAA CCAAGGAAGG CAGTATCTGT GCTCAGTTTC TGGGGCTGCT
  GCTGACTTAA GAGTATATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37487597	NES08918742	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C
ss320560193	CHEV_2_149492402	CHEVERUD	SCREENING_POP	f	SNP		C					C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27246378					SNP	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37487597	NES08918742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:149508586 () rs orientation: forward

Symbol	Name	Function Class
Gm53264	predicted gene, 53264	within coordinates
Rr566994	regulatory region 566994	within coordinates