rs27246393 SNP Detail

Summary

• ID
  rs27246393
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:149506463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTACAT TTATAAATCT
  TTCATCATAT ATATGACTTA TCATATATAG CTTAATTTCC AGTGGGAAGT CCATTATCTT
  TCTAAAAATC TAAACTGACC TCTCCTGTGC TGACTGGGCA ATGTATGTAC ATGTATGCAT
  GGTAGAAATC TCTCTTTCAT TTTGCTTATC TCTTGTCCCA TTTATTTATG TGGAAGTCCA
  K
  GAAGGCAGTG AGTCAAGCCT GTGTGGGTGG TAGAGAACAG ATGAATGTGT TAGGACAGAA
  GCTTGACACA AATTATGACT ATTCCCATCC ACAAGTCCCA GAGGACTTGA TAAGTATATT
  GAAATTCCTC AAGCTCTACA ATAGGAGAGC AAGGCTTTCT AGAATGAATA AAAGGGCCTC
  AGGGTTCAGC TTCCTGTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37487612	NES08918812	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27246393					SNP	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37487612	NES08918812	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:149506463 () rs orientation: forward

Symbol	Name	Function Class
Gm53264	predicted gene, 53264	within coordinates
Rr566994	regulatory region 566994	1910 bp proximal