rs27247662 SNP Detail

Summary

• ID
  rs27247662
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144223860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATGTTTAG TGAATTTTCT TCTGGAAGAA AGTGAATGTA
  GATTACCTGT TTTTAAGAAT ATTTCTTATT TGAATAGGAG TTGTTGGCCA CGGTCCAGAG
  M
  GTGTTCTGAG AGGAGCTGGC CAAGGCTTTT TTGTTTCTGA CATGCCATTG AGAAGCAGTC
  ATTACCCAGC AGTGTCTGTG TAGTTTAACC ACTAAGCCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37481695	NES08954982	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C	C		C	A	A	C	A	A
ss147792518	ENSMUSSNP6513607	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27247662					SNP	A	A	C	C	C	A	C	C	A	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481695	NES08954982	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144223860 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kat14	lysine acetyltransferase 14			Intron
				Noncoding-Transcript-Variant
Rr566452	regulatory region 566452			768 bp proximal