rs27247665 SNP Detail

Summary

• ID
  rs27247665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144222916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT CTAATGCTTC CAGAGCAGCG
  Y
  GATGCTTCTG TAGAGATTGT TAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
ss37481698	NES08954979	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T		C
ss320535662	CHEV_2_144206732	CHEVERUD	SCREENING_POP	f	SNP						C		T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
rs27247665					SNP	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481698	NES08954979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144222916 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kat14	lysine acetyltransferase 14			Intron
				Noncoding-Transcript-Variant
Rr566452	regulatory region 566452			1712 bp proximal