rs27250196 SNP Detail

Summary

• ID
  rs27250196
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:138246854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTCATC TGCATTAATC
  TCCTATCTCC TCTCCTTTAT TCTGGAGGTC AGTACTTTCA CTTTTGCTTT TCATTGGTCA
  GAAAGTGATC CAAGCTCCCA GTAACATGGG TACTGGAAGA TCTCAGGCGC TCATGGAAGC
  CCTTTGGCCA GGCAAATTGG TCATATAAAA TAGGTGGGGG CAAAGGAAGG TGTCTGTTGA
  K
  CTCACCTGCG TGTTATAGGG AATGGCAAAT GAAAAGTATT ATTTTAAAGG GAGTCTCTCA
  AGGAGCTCTC TCAAGGAGTT GAAGATTTGG GTCATGAACT GCGTCAATTG ACGTGACTTC
  CGAATCTGTG CACAAAGGGG TTATTTAGAA GAGGTTTGCC TTTACTAGCT GCAGAATAGA
  GTACAGTTGC TGGCAACTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37443818	NES08970936	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27250196					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37443818	NES08970936	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:138246854 () rs orientation: forward

Symbol	Name	Function Class
Rr565990	regulatory region 565990	1381 bp distal
Rr565991	regulatory region 565991	973 bp proximal
Rr565992	regulatory region 565992	1801 bp proximal