rs27250202 SNP Detail

Summary

• ID
  rs27250202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:138244386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCCAGCT CCTGTTCAGT
  CCTCTTAGAG TTTATACTCT AGAGAAGATC AGGCATTGAA TAAGAGGAAT GCCCGTGCTA
  TGAGGTAGCT TCTACCAGAT ACATGGGGTA TCTGTGAGAA AGAGGGATGC CTTGACAGCT
  GTTACAGTTC AAATACTGGG CTTGGGAATA CAGTAGCCAT ATTGGATGTC TACTGTCTAG
  Y
  CAAGTCACTT ATTCCTGGGA CTCAATCTTA TGCCACTATC TGCCTTACAA GCACAATAGT
  GAAAACTTCC TGAGTCCAGC CAACCCATGG AACCATTGTT GAATTAAGAT GCTAAGCTTT
  GGAGTGGTAT TAGAGAGCAT ATGCTAACCA AAACAATGAG AAACTGAGGC AACAGAGGCT
  ACAGGTCTCC CTAATGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37443824	NES08971056	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		C		C
ss320523554	CHEV_2_138228202	CHEVERUD	SCREENING_POP	f	SNP									T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27250202					SNP	T	T	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37443824	NES08971056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:138244386 () rs orientation: forward

Symbol	Name	Function Class
Rr565990	regulatory region 565990	606 bp proximal