rs27250203 SNP Detail

Summary

• ID
  rs27250203
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:138244244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCAGCTG CTCTATAAAA
  ATGATCTCCT CCAAGATTAT GTAGGACTCT CTCCTTGAGC CTGGCTTGTC CCTATGACTT
  ACCATTCAGT CAGAAAGTGT GATGGAAGTA GGGTTGTCAT AAATCATACA CGAACCCTAA
  AATGACCCAG CTCCTGTTCA GTCCTCTTAG AGTTTATACT CTAGAGAAGA TCAGGCATTG
  R
  ATAAGAGGAA TGCCCGTGCT ATGAGGTAGC TTCTACCAGA TACATGGGGT ATCTGTGAGA
  AAGAGGGATG CCTTGACAGC TGTTACAGTT CAAATACTGG GCTTGGGAAT ACAGTAGCCA
  TATTGGATGT CTACTGTCTA GTCAAGTCAC TTATTCCTGG GACTCAATCT TATGCCACTA
  TCTGCCTTAC AAGCACAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37443825	NES08971055	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G		G	G	G	G		G
ss320523552	CHEV_2_138228060	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27250203					SNP	A	A	A	A	A	A	G	A	A	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37443825	NES08971055	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:138244244 () rs orientation: forward

Symbol	Name	Function Class
Rr565990	regulatory region 565990	748 bp proximal