rs27250205 SNP Detail

Summary

• ID
  rs27250205
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:138244127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTAGAGAG ATGGGCCTCT
  GCAAGATAGA TGAAATGGAC GTCCTTCATC AGAGAATCAG AGGATATAAC AACCATGAAG
  GCTTTTAAGG GATATAGGTC TCCTTAACTT TATAAGTATG GCAGCTGCTC TATAAAAATG
  ATCTCCTCCA AGATTATGTA GGACTCTCTC CTTGAGCCTG GCTTGTCCCT ATGACTTACC
  W
  TTCAGTCAGA AAGTGTGATG GAAGTAGGGT TGTCATAAAT CATACACGAA CCCTAAAATG
  ACCCAGCTCC TGTTCAGTCC TCTTAGAGTT TATACTCTAG AGAAGATCAG GCATTGAATA
  AGAGGAATGC CCGTGCTATG AGGTAGCTTC TACCAGATAC ATGGGGTATC TGTGAGAAAG
  AGGGATGCCT TGACAGCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37443827	NES08971053	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		T		T
ss320523551	CHEV_2_138227943	CHEVERUD	SCREENING_POP	f	SNP									A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27250205					SNP	A	A	A	A	A	A	A	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37443827	NES08971053	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:138244127 () rs orientation: forward

Symbol	Name	Function Class
Rr565990	regulatory region 565990	865 bp proximal