rs27250207 SNP Detail

Summary

• ID
  rs27250207
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:138243899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCATCGC CAGCAGCAGT
  AGCATTATAT ATAATCACTG TCATCATCAC ATCTTCATTG CAAGTCTAGC ATGATGTATA
  CTTCACCGCA TCAGGTAACG GAGTTTCAAG GAGGCATAAA GGCCTTGAGG ATCTTATAGT
  CAAGTTTGGA AGTCAGAGTA ACTACATTTA GAAGGTAAAT CACAATGCGA GATTGCATGT
  K
  CTTAGTGCTA AATGAGCAAT GGTGATAGCC TAGAGAGATG GGCCTCTGCA AGATAGATGA
  AATGGACGTC CTTCATCAGA GAATCAGAGG ATATAACAAC CATGAAGGCT TTTAAGGGAT
  ATAGGTCTCC TTAACTTTAT AAGTATGGCA GCTGCTCTAT AAAAATGATC TCCTCCAAGA
  TTATGTAGGA CTCTCTCCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37443829	NES08971051	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G		G	G	G	G		G
ss320523549	CHEV_2_138227715	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27250207					SNP	T	T	T	T	T	T	G	T	T	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37443829	NES08971051	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:138243899 () rs orientation: forward

Symbol	Name	Function Class
Rr565990	regulatory region 565990	1093 bp proximal