rs27250208 SNP Detail

Summary

• ID
  rs27250208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:138243785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATTATTT TTCAACGCTG
  CAAATGGTTG CTCTGTACTC ATTCAAGTTG ACAGGATGAT TTAAAATTGG TGATTCTATT
  CTGACCACCA CCACCACCAC CACCATCATC ATTATCATCA TCGCCAGCAG CAGTAGCATT
  ATATATAATC ACTGTCATCA TCACATCTTC ATTGCAAGTC TAGCATGATG TATACTTCAC
  Y
  GCATCAGGTA ACGGAGTTTC AAGGAGGCAT AAAGGCCTTG AGGATCTTAT AGTCAAGTTT
  GGAAGTCAGA GTAACTACAT TTAGAAGGTA AATCACAATG CGAGATTGCA TGTTCTTAGT
  GCTAAATGAG CAATGGTGAT AGCCTAGAGA GATGGGCCTC TGCAAGATAG ATGAAATGGA
  CGTCCTTCAT CAGAGAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37443830	NES08971050	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C		C	T	T		C
ss320523548	CHEV_2_138227601	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27250208					SNP	C	C	C	C	C	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37443830	NES08971050	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:138243785 () rs orientation: forward

Symbol	Name	Function Class
Rr565990	regulatory region 565990	1207 bp proximal