rs27252453 SNP Detail

Summary

• ID
  rs27252453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:134487685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAC AAAAAGCTAT GTCTATGTCC
  Y
  GTTGCTGAAG CACATTCTGC TTTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37457978	NES08974316	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C		T	T	T		T	T		C
ss45240937	mCV25095776	ABI	CRAMUS_MOUSE	f	SNP		C	T				T		T
ss147634578	ENSMUSSNP3688812	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320513938	CHEV_2_134471501	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27252453					SNP	C	C	T	T	T	C	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37457978	NES08974316	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134487685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12319	CpG island 12319	1405 bp distal
Rr397337	regulatory region 397337	1412 bp downstream
Tmx4	thioredoxin-related transmembrane protein 4	1644 bp upstream
Tssr26507	transcription start site region 26507	1723 bp upstream
Tssr26508	transcription start site region 26508	1707 bp upstream
Tssr26509	transcription start site region 26509	1656 bp upstream
Tssr26510	transcription start site region 26510	1622 bp upstream
Tssr26511	transcription start site region 26511	1599 bp upstream
Tssr26512	transcription start site region 26512	1577 bp upstream