rs27252454 SNP Detail

Summary

• ID
  rs27252454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:134487292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGATGC AAGTTTAGTC
  AGTGTTGAAG CTAATCGCAT CTTTTTCATG TATACATTAG TTGGAAATGA GAAATCAAAG
  AAGCTCAAGA GGCACAGAAG AAAACATTAG TAATGCATTT CTCATGTCTA GCAGAGATTG
  TTTCCAGAAC AATCCCATCT CCTGCATTTC GGATGAAAGA GGAGGATGCT CAGAGGATTA
  Y
  GCAAGGATTG TAGGAGGGGC TTTCCTTCTA GGAAGCACAG AGTAGGATAG GGGCATAGCT
  GCCTGCCCCT GCTATGGCAT CTGGGTCGCT GTGCTTCCTA GCCACAAGAT CTAGGAGGAA
  AAAAAGACTA GCTCTGTTTC AATACAGCTG ATGTTAAAAC ATGCTCTGAA AGGTAGCTGT
  GTAGATGATA GAAGTATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37457979	NES08974315	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27252454					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37457979	NES08974315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134487292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12319	CpG island 12319	1012 bp distal
Rr55684	regulatory region 55684	691 bp distal
Rr397337	regulatory region 397337	1019 bp downstream
Tmx4	thioredoxin-related transmembrane protein 4	1251 bp upstream
Tssr26507	transcription start site region 26507	1330 bp upstream
Tssr26508	transcription start site region 26508	1314 bp upstream
Tssr26509	transcription start site region 26509	1263 bp upstream
Tssr26510	transcription start site region 26510	1229 bp upstream
Tssr26511	transcription start site region 26511	1206 bp upstream
Tssr26512	transcription start site region 26512	1184 bp upstream